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Development history and current applications of methods for detecting antibiotic resistance genes
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时间:2025-05-09 07:26
[1] HUTCHINGS MI, TRUMAN AW, WILKINSON B. Antibiotics: past, present and future[J]. Current Opinion in Microbiology, 2019, 51: 72-80 DOI:10.1016/j.mib.2019.10.008. [2] RIBEIRO Da CUNHA B, FONSECA LP, CALADO CRC. Antibiotic discovery: where have we come from, where do we go?[J]. Antibiotics, 2019, 8(2): 45 DOI:10.3390/antibiotics8020045. [3] LYU J, YANG LS, ZHANG L, YE BX, WANG L. Antibiotics in soil and water in China: a systematic review and source analysis[J]. Environmental Pollution, 2020, 266(Pt 1): 115147. [4] ZHU YG, ZHAO Y, LI B, HUANG CL, ZHANG SY, YU S, CHEN YS, ZHANG T, GILLINGS MR, SU JQ. Continental-scale pollution of estuaries with antibiotic resistance genes[J]. Nature Microbiology, 2017, 2: 16270 DOI:10.1038/nmicrobiol.2016.270. [5] KARKMAN A, PÄRNÄNEN K, JOAKIM LARSSON DG. Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environments[J]. Nature Communications, 2019, 10: 80 DOI:10.1038/s41467-018-07992-3. [6] SMITH WPJ, WUCHER BR, NADELL CD, FOSTER KR. Bacterial defences: mechanisms, evolution and antimicrobial resistance[J]. Nature Reviews Microbiology, 2023, 21: 519-534 DOI:10.1038/s41579-023-00877-3. [7] MA YY, RAMONEDA J, JOHNSON DR. Timing of antibiotic administration determines the spread of plasmid-encoded antibiotic resistance during microbial range expansion[J]. Nature Communications, 2023, 14: 3530 DOI:10.1038/s41467-023-39354-z. [8] WEI ZY, SHEN WL, FENG K, FENG YZ, HE ZL, LI Y, JIANG CY, LIU SJ, ZHU YG, DENG Y. Organic fertilizer potentiates the transfer of typical antibiotic resistance gene among special bacterial species[J]. Journal of Hazardous Materials, 2022, 435: 128985 DOI:10.1016/j.jhazmat.2022.128985. [9] XIE JW, JIN L, HE TT, CHEN BW, LUO XS, FENG BH, HUANG W, LI J, FU PQ, LI XD. Bacteria and antibiotic resistance genes (ARGs) in PM2.5 from China: implications for human exposure[J]. Environmental Science & Technology, 2019, 53(2): 963-972. [10] FITZPATRICK KJ, ROHLF HJ, SUTHERLAND TD, KOO KM, BECKETT S, OKELO WO, KEYBURN AL, MORGAN BS, DRIGO B, TRAU M, DONNER E, DJORDJEVIC SP, de BARRO PJ. Progressing antimicrobial resistance sensing technologies across human, animal, and environmental health domains[J]. ACS Sensors, 2021, 6(12): 4283-4296 DOI:10.1021/acssensors.1c01973. [11] VASALA A, HYTÖNEN VP, LAITINEN OH. Modern tools for rapid diagnostics of antimicrobial resistance[J]. Frontiers in Cellular and Infection Microbiology, 2020, 10: 308 DOI:10.3389/fcimb.2020.00308. [12] BOOLCHANDANI M, D'SOUZA AW, DANTAS G. Sequencing-based methods and resources to study antimicrobial resistance[J]. Nature Reviews Genetics, 2019, 20: 356-370. [13] HONG B, BA YB, NIU L, LOU F, ZHANG ZH, LIU HQ, PAN YJ, ZHAO Y. A comprehensive research on antibiotic resistance genes in microbiota of aquatic animals[J]. Frontiers in Microbiology, 2018, 9: 1617 DOI:10.3389/fmicb.2018.01617. [14] LI B, YAN T. Next generation sequencing reveals limitation of qPCR methods in quantifying emerging antibiotic resistance genes (ARGs) in the environment[J]. Applied Microbiology and Biotechnology, 2021, 105(7): 2925-2936 DOI:10.1007/s00253-021-11202-4. [15] WANG Z, HAN MZ, LI EH, LIU X, WEI HM, YANG C, LU SY, NING K. Distribution of antibiotic resistance genes in an agriculturally disturbed lake in China: their links with microbial communities, antibiotics, and water quality[J]. Journal of Hazardous Materials, 2020, 393: 122426 DOI:10.1016/j.jhazmat.2020.122426. [16] WU DL, ZHANG M, HE LX, ZOU HY, LIU YS, LI BB, YANG YY, LIU CX, HE LY, YING GG. Contamination profile of antibiotic resistance genes in ground water in comparison with surface water[J]. The Science of the Total Environment, 2020, 715: 136975 DOI:10.1016/j.scitotenv.2020.136975. [17] MAO K, ZHANG H, RAN F, CAO HR, FENG RD, DU W, LI XQ, YANG ZG. Portable biosensor combining CRISPR/Cas12a and loop-mediated isothermal amplification for antibiotic resistance gene ermB in wastewater[J]. Journal of Hazardous Materials, 2024, 462: 132793 DOI:10.1016/j.jhazmat.2023.132793. [18] PARDUE ML, GALL JG. Molecular hybridization of radioactive DNA to the DNA of cytological preparations[J]. Proceedings of the National Academy of Sciences of the United States of America, 1969, 64(2): 600-604. [19] MARTIN C, TIMM J, RAUZIER J, GOMEZ-LUS R, DAVIES J, GICQUEL B. Transposition of an antibiotic resistance element in mycobacteria[J]. Nature, 1990, 345: 739-743 DOI:10.1038/345739a0. [20] WEBB V, DAVIES J. Antibiotic preparations contain DNA: a source of drug resistance genes?[J]. Antimicrobial Agents and Chemotherapy, 1993, 37(11): 2379-2384 DOI:10.1128/AAC.37.11.2379. [21] ALEXANDER JAN, WORRALL LJ, HU JH, VUCKOVIC M, SATISHKUMAR N, POON R, SOBHANIFAR S, ROSELL FI, JENKINS J, CHIANG D, MOSIMANN WA, CHAMBERS HF, PAETZEL M, CHATTERJEE SS, STRYNADKA NCJ. Structural basis of broad-spectrum β-lactam resistance in Staphylococcus aureus[J]. Nature, 2023, 613: 375-382 DOI:10.1038/s41586-022-05583-3. [22] RASOULY A, SHAMOVSKY Y, EPSHTEIN V, TAM K, VASILYEV N, HAO ZT, QUARTA G, PANI B, LI LT, VALLIN C, SHAMOVSKY I, KRISHNAMURTHY S, SHTILERMAN A, VANTINE S, TORRES VJ, NUDLER E. Analysing the fitness cost of antibiotic resistance to identify targets for combination antimicrobials[J]. Nature Microbiology, 2021, 6: 1410-1423 DOI:10.1038/s41564-021-00973-1. [23] WILAMOWSKI M, SHERRELL DA, KIM Y, LAVENS A, HENNING RW, LAZARSKI K, SHIGEMOTO A, ENDRES M, MALTSEVA N, BABNIGG G, BURDETTE SC, SRAJER V, JOACHIMIAK A. Time-resolved β-lactam cleavage by L1 metallo-β-lactamase[J]. Nature Communications, 2022, 13(1): 7379 DOI:10.1038/s41467-022-35029-3. [24] MULLIS KB. Process for amplifying nucleic acid sequences: US4683202[P]. 1987-07-28. [25] MULLIS KB, FALOONA FA. Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction[J]. Methods in Enzymology, 1987, 155: 335-350. [26] ARYA M, SHERGILL IS, WILLIAMSON M, GOMMERSALL L, ARYA N, PATEL HRH. Basic principles of real-time quantitative PCR[J]. Expert Review of Molecular Diagnostics, 2005, 5(2): 209-219 DOI:10.1586/14737159.5.2.209. [27] WU YC, DONG N, CAI C, ZENG Y, LU JY, LIU CC, WANG HY, ZHANG YY, HUANG L, ZHAI WS, SHAO DY, LI RC, LIU DJ, CHEN S, ZHANG R. Aeromonas spp. from hospital sewage act as a reservoir of genes resistant to last-line antibiotics[J]. Drug Resistance Updates: Reviews and Commentaries in Antimicrobial and Anticancer Chemotherapy, 2023, 67: 100925. [28] HEID CA, STEVENS J, LIVAK KJ, WILLIAMS PM. Real time quantitative PCR[J]. Genome Research, 1996, 6(10): 986-994 DOI:10.1101/gr.6.10.986. [29] PIATEK AS, TYAGI S, POL AC, TELENTI A, MILLER LP, KRAMER FR, ALLAND D. Molecular beacon sequence analysis for detecting drug resistance in Mycobacterium tuberculosis[J]. Nature Biotechnology, 1998, 16: 359-363 DOI:10.1038/nbt0498-359. [30] ZHANG ZH, LI X, LIU H, ZAMYADI A, GUO WS, WEN HT, GAO L, NGHIEM LD, WANG QL. Advancements in detection and removal of antibiotic resistance genes in sludge digestion: a state-of-art review[J]. Bioresource Technology, 2022, 344(Pt A): 126197. [31] CACACE D, FATTA-KASSINOS D, MANAIA CM, CYTRYN E, KREUZINGER N, RIZZO L, KARAOLIA P, SCHWARTZ T, ALEXANDER J, MERLIN C, GARELICK H, SCHMITT H, de VRIES D, SCHWERMER CU, MERIC S, OZKAL CB, PONS MN, KNEIS D, BERENDONK TU. Antibiotic resistance genes in treated wastewater and in the receiving water bodies: a pan-European survey of urban settings[J]. Water Research, 2019, 162: 320-330 DOI:10.1016/j.watres.2019.06.039. [32] PAULUS GK, HORNSTRA LM, ALYGIZAKIS N, SLOBODNIK J, THOMAIDIS N, MEDEMA G. The impact of on-site hospital wastewater treatment on the downstream communal wastewater system in terms of antibiotics and antibiotic resistance genes[J]. International Journal of Hygiene and Environmental Health, 2019, 222(4): 635-644 DOI:10.1016/j.ijheh.2019.01.004. [33] ROSSI F, PÉGUILHAN R, TURGEON N, VEILLETTE M, BARAY JL, DEGUILLAUME L, AMATO P, DUCHAINE C. Quantification of antibiotic resistance genes (ARGs) in clouds at a mountain site (puy de Dôme, central France)[J]. The Science of the Total Environment, 2023, 865: 161264 DOI:10.1016/j.scitotenv.2022.161264. [34] KEENUM I, LIGUORI K, CALARCO J, DAVIS BC, MILLIGAN E, HARWOOD VJ, PRUDEN A. A framework for standardized qPCR-targets and protocols for quantifying antibiotic resistance in surface water, recycled water and wastewater[J]. Critical Reviews in Environmental Science and Technology, 2022, 52(24): 4395-4419 DOI:10.1080/10643389.2021.2024739. [35] BOOKOUT AL, MANGELSDORF DJ. Quantitative real-time PCR protocol for analysis of nuclear receptor signaling pathways[J]. Nuclear Receptor Signaling, 2003, 1: e012. [36] WANG FH, QIAO M, SU JQ, CHEN Z, ZHOU X, ZHU YG. High throughput profiling of antibiotic resistance genes in urban park soils with reclaimed water irrigation[J]. Environmental Science & Technology, 2014, 48(16): 9079-9085. [37] TAN YL, CAO XD, CHEN SJ, AO XL, LI JL, HU KD, LIU SL, PENTTINEN P, YANG Y, YU XM, LIU AP, LIU CX, ZHAO K, ZOU LK. Antibiotic and heavy metal resistance genes in sewage sludge survive during aerobic composting[J]. The Science of the Total Environment, 2023, 866: 161386 DOI:10.1016/j.scitotenv.2023.161386. [38] PÄRNÄNEN KMM, NARCISO-DA-ROCHA C, KNEIS D, BERENDONK TU, CACACE D, DO TT, ELPERS C, FATTA-KASSINOS D, HENRIQUES I, JAEGER T, KARKMAN A, MARTINEZ JL, MICHAEL SG, MICHAEL-KORDATOU I, O'SULLIVAN K, RODRIGUEZ-MOZAZ S, SCHWARTZ T, SHENG HJ, SØRUM H, STEDTFELD RD, et al. Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence[J]. Science Advances, 2019, 5(3): eaau9124 DOI:10.1126/sciadv.aau9124. [39] HINDSON BJ, NESS KD, MASQUELIER DA, BELGRADER P, HEREDIA NJ, MAKAREWICZ AJ, BRIGHT IJ, LUCERO MY, HIDDESSEN AL, LEGLER TC, KITANO TK, HODEL MR, PETERSEN JF, WYATT PW, STEENBLOCK ER, SHAH PH, BOUSSE LJ, TROUP CB, MELLEN JC, WITTMANN DK, et al. High-throughput droplet digital PCR system for absolute quantitation of DNA copy number[J]. Analytical Chemistry, 2011, 83(22): 8604-8610 DOI:10.1021/ac202028g. [40] KELLEY K, COSMAN A, BELGRADER P, CHAPMAN B, SULLIVAN DC. Detection of methicillin-resistant Staphylococcus aureus by a duplex droplet digital PCR assay[J]. Journal of Clinical Microbiology, 2013, 51(7): 2033-2039 DOI:10.1128/JCM.00196-13. [41] CAVÉ L, BROTHIER E, ABROUK D, BOUDA PS, HIEN E, NAZARET S. Efficiency and sensitivity of the digital droplet PCR for the quantification of antibiotic resistance genes in soils and organic residues[J]. Applied Microbiology and Biotechnology, 2016, 100(24): 10597-10608 DOI:10.1007/s00253-016-7950-5. [42] XIE ST, DING LJ, HUANG FY, ZHAO Y, AN XL, SU JQ, SUN GX, SONG YQ, ZHU YG. VFG-Chip: a high-throughput qPCR microarray for profiling virulence factor genes from the environment[J]. Environment International, 2023, 172: 107761 DOI:10.1016/j.envint.2023.107761. [43] ZHOU M, LIU ZS, ZHANG BF, YANG JW, HU BL. Interaction between arsenic metabolism genes and arsenic leads to a lose-lose situation[J]. Environmental Pollution, 2022, 312: 119971 DOI:10.1016/j.envpol.2022.119971. [44] QI Q, GHALY TM, PENESYAN A, RAJABAL V, STACEY JA, TETU SG, GILLINGS MR. Uncovering bacterial hosts of class 1 integrons in an urban coastal aquatic environment with a single-cell fusion-polymerase chain reaction technology[J]. Environmental Science & Technology, 2023, 57(12): 4870-4879. [45] SANGER F, COULSON AR. A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase[J]. Journal of Molecular Biology, 1975, 94(3): 441-448 DOI:10.1016/0022-2836(75)90213-2. [46] SANGER F, NICKLEN S, COULSON AR. DNA sequencing with chain-terminating inhibitors[J]. Proceedings of the National Academy of Sciences of the United States of America, 1977, 74(12): 5463-5467. [47] EGLI K, WAGNER K, KELLER PM, RISCH L, RISCH M, BODMER T. Comparison of the diagnostic performance of qPCR, Sanger sequencing, and whole-genome sequencing in determining clarithromycin and levofloxacin resistance in Helicobacter pylori[J]. Frontiers in Cellular and Infection Microbiology, 2020, 10: 596371 DOI:10.3389/fcimb.2020.596371. [48] GÜNERI CÖ, STINGL K, GROBBEL M, HAMMERL JA, KÜREKCI C. Different fosA genes were found on mobile genetic elements in Escherichia coli from wastewaters of hospitals and municipals in Turkey[J]. The Science of the Total Environment, 2022, 824: 153928 DOI:10.1016/j.scitotenv.2022.153928. [49] MARGULIES M, EGHOLM M, ALTMAN WE, ATTIYA S, BADER JS, BEMBEN LA, BERKA J, BRAVERMAN MS, CHEN YJ, CHEN ZT, DEWELL SB, DU L, FIERRO JM, GOMES XV, GODWIN BC, HE W, HELGESEN S, HO CH, IRZYK GP, JANDO SC, et al. Genome sequencing in microfabricated high-density picolitre reactors[J]. Nature, 2005, 437: 376-380 DOI:10.1038/nature03959. [50] ALLEN HK, MOE LA, RODBUMRER J, GAARDER A, HANDELSMAN J. Functional metagenomics reveals diverse beta-lactamases in a remote Alaskan soil[J]. The ISME Journal, 2009, 3(2): 243-251 DOI:10.1038/ismej.2008.86. [51] ALLEN HK, CLOUD-HANSEN KA, WOLINSKI JM, GUAN CH, GREENE S, LU S, BOEYINK M, BRODERICK NA, RAFFA KF, HANDELSMAN J. Resident microbiota of the gypsy moth midgut harbors antibiotic resistance determinants[J]. DNA and Cell Biology, 2009, 28(3): 109-117 DOI:10.1089/dna.2008.0812. [52] ZHU L, YUAN L, SHUAI XY, LIN ZJ, SUN YJ, ZHOU ZC, MENG LX, JU F, CHEN H. Deciphering basic and key traits of antibiotic resistome in influent and effluent of hospital wastewater treatment systems[J]. Water Research, 2023, 231: 119614 DOI:10.1016/j.watres.2023.119614. [53] LI CY, LI XY, GUO RJ, NI W, LIU KP, LIU Z, DAI JH, XU YR, ABDURIYIM S, WU ZY, ZENG YQ, LEI BB, ZHANG YF, WANG Y, ZENG WB, ZHANG Q, CHEN CF, QIAO J, LIU C, HU SW. Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse[J]. Microbiome, 2023, 11(1): 7 DOI:10.1186/s40168-022-01448-z. [54] PAN C, GUO LY, YU Y, LI WJ, XU DD, CHEN WD, ZHU L, HU BL, ZHENG P, ZHANG M. Enhanced resuscitation of anammox granular sludge by adding folate: a perspective from the growth factor[J]. Chemical Engineering Journal, 2023, 478: 147470 DOI:10.1016/j.cej.2023.147470. [55] LIU ZS, ZHAO YX, ZHANG BF, WANG JQ, ZHU LZ, HU BL. Deterministic effect of pH on shaping soil resistome revealed by metagenomic analysis[J]. Environmental Science & Technology, 2023, 57(2): 985-996. [56] ZHANG T, JI ZQ, LI J, YU LY. Metagenomic insights into the antibiotic resistome in freshwater and seawater from an Antarctic ice-free area[J]. Environmental Pollution, 2022, 309: 119738 DOI:10.1016/j.envpol.2022.119738. [57] ZHAO RX, FENG J, HUANG J, LI XY, LI B. Reponses of microbial community and antibiotic resistance genes to the selection pressures of ampicillin, cephalexin and chloramphenicol in activated sludge reactors[J]. The Science of the Total Environment, 2021, 755(Pt 2): 142632. [58] TANG HM, LIU ZS, HU BL, ZHU LZ. D-ring modifications of tetracyclines determine their ability to induce resistance genes in the environment[J]. Environmental Science & Technology, 2024, 58(2): 1338-1348. [59] FLUSBERG BA, WEBSTER DR, LEE JH, TRAVERS KJ, OLIVARES EC, CLARK TA, KORLACH J, TURNER SW. Direct detection of DNA methylation during single-molecule, real-time sequencing[J]. Nature Methods, 2010, 7: 461-465 DOI:10.1038/nmeth.1459. [60] WICHMANN F, UDIKOVIC-KOLIC N, ANDREW S, HANDELSMAN J. Diverse antibiotic resistance genes in dairy cow manure[J]. mBio, 2014, 5(2): e01017. [61] SCHMIDT K, MWAIGWISYA S, CROSSMAN LC, DOUMITH M, MUNROE D, PIRES C, KHAN AM, WOODFORD N, SAUNDERS NJ, WAIN J, O'GRADY J, LIVERMORE DM. Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing[J]. Journal of Antimicrobial Chemotherapy, 2017, 72(1): 104-114 DOI:10.1093/jac/dkw397. [62] WENGER AM, PELUSO P, ROWELL WJ, CHANG PC, HALL RJ, CONCEPCION GT, EBLER J, FUNGTAMMASAN A, KOLESNIKOV A, OLSON ND, TÖPFER A, ALONGE M, MAHMOUD M, QIAN YF, CHIN CS, PHILLIPPY AM, SCHATZ MC, MYERS G, DePRISTO MA, RUAN J, et al. Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome[J]. Nature Biotechnology, 2019, 37: 1155-1162 DOI:10.1038/s41587-019-0217-9. [63] YANG Q, LI Y, FANG L, LEI TL, CAI H, HUA XT, ZHENG M, YU YS. A novel KPC-113 variant conferring carbapenem and ceftazidime-avibactam resistance in a multidrug-resistant Pseudomonas aeruginosa isolate[J]. Clinical Microbiology and Infection: the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases, 2023, 29(3): 387.e7-387.e14 DOI:10.1016/j.cmi.2022.10.013. [64] SUKHUM KV, DIORIO-TOTH L, DANTAS G. Genomic and metagenomic approaches for predictive surveillance of emerging pathogens and antibiotic resistance[J]. Clinical Pharmacology and Therapeutics, 2019, 106(3): 512-524 DOI:10.1002/cpt.1535. [65] HADJADJ L, BARON SA, DIENE SM, ROLAIN JM. How to discover new antibiotic resistance genes?[J]. Expert Review of Molecular Diagnostics, 2019, 19(4): 349-362 DOI:10.1080/14737159.2019.1592678. [66] LI N, LIU C, ZHANG ZG, LI HN, SONG TT, LIANG T, LI BX, LI LY, FENG S, SU QQ, YE J, ZHU CX. Research and technological advances regarding the study of the spread of antimicrobial resistance genes and antimicrobial-resistant bacteria related to animal husbandry[J]. International Journal of Environmental Research and Public Health, 2019, 16(24): 4896 DOI:10.3390/ijerph16244896. [67] LIU L, YANG Y, DENG Y, ZHANG T. Nanopore long-read-only metagenomics enables complete and high-quality genome reconstruction from mock and complex metagenomes[J]. Microbiome, 2022, 10(1): 209 DOI:10.1186/s40168-022-01415-8. [68] YIN XL, ZHENG XW, LI LG, ZHANG AN, JIANG XT, ZHANG T. ARGs-OAP v3.0: antibiotic-resistance gene database curation and analysis pipeline optimization[J]. Engineering, 2023, 27: 234-241 DOI:10.1016/j.eng.2022.10.011. [69] YANG Y, DENG Y, SHI XH, LIU L, YIN XL, ZHAO WW, LI SX, YANG C, ZHANG T. QMRA of beach water by nanopore sequencing-based viability-metagenomics absolute quantification[J]. Water Research, 2023, 235: 119858 DOI:10.1016/j.watres.2023.119858. [70] YAJIMA D, FUJITA H, HAYASHI I, SHIMA GT, SUZUKI K, TOJU H. Core species and interactions prominent in fish-associated microbiome dynamics[J]. Microbiome, 2023, 11(1): 53 DOI:10.1186/s40168-023-01498-x. [71] YAN L, ZHOU J, ZHENG Y, GAMSON AS, ROEMBKE BT, NAKAYAMA S, SINTIM HO. Isothermal amplified detection of DNA and RNA[J]. Molecular BioSystems, 2014, 10(5): 970-1003 DOI:10.1039/c3mb70304e. [72] SUN PC, NIU K, DU HY, LI RX, CHEN JP, LU XB. Ultrasensitive rapid detection of antibiotic resistance genes by electrochemical ratiometric genosensor based on 2D monolayer Ti3C2@AuNPs[J]. Biosensors & Bioelectronics, 2023, 240: 115643. [73] WALKER GT, FRAISER MS, SCHRAM JL, LITTLE MC, NADEAU JG, MALINOWSKI DP. Strand displacement amplification: an isothermal, in vitro DNA amplification technique[J]. Nucleic Acids Research, 1992, 20(7): 1691-1696 DOI:10.1093/nar/20.7.1691. [74] NOTOMI T, OKAYAMA H, MASUBUCHI H, YONEKAWA T, WATANABE K, AMINO N, HASE T. Loop-mediated isothermal amplification of DNA[J]. Nucleic Acids Research, 2000, 28(12): e63 DOI:10.1093/nar/28.12.e63. [75] VINCENT M, XU Y, KONG HM. Helicase-dependent isothermal DNA amplification[J]. EMBO Reports, 2004, 5(8): 795-800 DOI:10.1038/sj.embor.7400200. [76] PIEPENBURG O, WILLIAMS CH, STEMPLE DL, ARMES NA. DNA detection using recombination proteins[J]. PLoS Biology, 2006, 4(7): e204 DOI:10.1371/journal.pbio.0040204. [77] MISAWA Y, YOSHIDA A, SAITO R, YOSHIDA H, OKUZUMI K, ITO N, OKADA M, MORIYA K, KOIKE K. Application of loop-mediated isothermal amplification technique to rapid and direct detection of methicillin-resistant Staphylococcus aureus (MRSA) in blood cultures[J]. Journal of Infection and Chemotherapy, 2007, 13(3): 134-140 DOI:10.1007/s10156-007-0508-9. [78] GOLDMEYER J, LI HJ, McCORMAC M, COOK S, STRATTON C, LEMIEUX B, KONG HM, TANG W, TANG YW. Identification of Staphylococcus aureus and determination of methicillin resistance directly from positive blood cultures by isothermal amplification and a disposable detection device[J]. Journal of Clinical Microbiology, 2008, 46(4): 1534-1536 DOI:10.1128/JCM.02234-07. [79] AUGUSTINE R, HASAN A, DAS S, AHMED R, MORI Y, NOTOMI T, KEVADIYA BD, THAKOR AS. Loop-mediated isothermal amplification (LAMP): a rapid, sensitive, specific, and cost-effective point-of-care test for coronaviruses in the context of COVID-19 pandemic[J]. Biology, 2020, 9(8): 182 DOI:10.3390/biology9080182. [80] SUEA-NGAM A, CHOOPARA I, LI SK, SCHMELCHER M, SOMBOONNA N, HOWES PD, DEMELLO AJ. In situ nucleic acid amplification and ultrasensitive colorimetric readout in a paper-based analytical device using silver nanoplates[J]. Advanced Healthcare Materials, 2021, 10(7): e2001755 DOI:10.1002/adhm.202001755. [81] LI J, MACDONALD J, von STETTEN F. Review: a comprehensive summary of a decade development of the recombinase polymerase amplification[J]. The Analyst, 2018, 144(1): 31-67. [82] BUTTERWORTH A, PRATIBHA P, MARX A, CORRIGAN DK. Electrochemical detection of oxacillin resistance using direct-labeling solid-phase isothermal amplification[J]. ACS Sensors, 2021, 6(10): 3773-3780 DOI:10.1021/acssensors.1c01688. [83] WANG YX, CHEN H, GAO HX, WEI HJ, WANG YL, MU K, LIU LY, DAI EH, RONG Z, WANG SQ. CESSAT: a chemical additive-enhanced single-step accurate CRISPR/Cas13 testing system for field-deployable ultrasensitive detection and genotyping of SARS-CoV-2 variants of concern[J]. Biosensors & Bioelectronics, 2023, 229: 115238. [84] GARNEAU JE, DUPUIS MÈ, VILLION M, ROMERO DA, BARRANGOU R, BOYAVAL P, FREMAUX C, HORVATH P, MAGADÁN AH, MOINEAU S. The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA[J]. Nature, 2010, 468: 67-71 DOI:10.1038/nature09523. [85] LU SH, TONG XH, HAN Y, ZHANG K, ZHANG YZ, CHEN QB, DUAN JY, LEI XL, HUANG MH, QIU Y, ZHANG DY, ZHOU X, ZHANG Y, YIN H. Fast and sensitive detection of SARS-CoV-2 RNA using suboptimal protospacer adjacent motifs for Cas12a[J]. Nature Biomedical Engineering, 2022, 6: 286-297 DOI:10.1038/s41551-022-00861-x. [86] MÜLLER V, RAJER F, FRYKHOLM K, NYBERG LK, QUADERI S, FRITZSCHE J, KRISTIANSSON E, AMBJÖRNSSON T, SANDEGREN L, WESTERLUND F. Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping[J]. Scientific Reports, 2016, 6: 37938 DOI:10.1038/srep37938. [87] ZETSCHE B, GOOTENBERG JS, ABUDAYYEH OO, SLAYMAKER IM, MAKAROVA KS, ESSLETZBICHLER P, VOLZ SE, JOUNG J, van der OOST J, REGEV A, KOONIN EV, ZHANG F. Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system[J]. Cell, 2015, 163(3): 759-771 DOI:10.1016/j.cell.2015.09.038. [88] ABUDAYYEH OO, GOOTENBERG JS, KONERMANN S, JOUNG J, SLAYMAKER IM, COX DBT, SHMAKOV S, MAKAROVA KS, SEMENOVA E, MINAKHIN L, SEVERINOV K, REGEV A, LANDER ES, KOONIN EV, ZHANG F. C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector[J]. Science, 2016, 353(6299): aaf5573 DOI:10.1126/science.aaf5573. [89] YUAN MZ, DING RH, CHEN SY, DUAN GC. Advances in field detection based on CRISPR/Cas system[J]. ACS Synthetic Biology, 2021, 10(11): 2824-2832 DOI:10.1021/acssynbio.1c00401. [90] AMAN R, MAHAS A, MAHFOUZ M. Nucleic acid detection using CRISPR/Cas biosensing technologies[J]. ACS Synthetic Biology, 2020, 9(6): 1226-1233 DOI:10.1021/acssynbio.9b00507. [91] JOUNG J, LADHA A, SAITO M, KIM NG, WOOLLEY AE, SEGEL M, BARRETTO RPJ, RANU A, MACRAE RK, FAURE G, IOANNIDI EI, KRAJESKI RN, BRUNEAU R, HUANG ML W, YU XG, LI JZ, WALKER BD, HUNG DT, GRENINGER AL, JEROME KR, et al. Detection of SARS-CoV-2 with SHERLOCK one-pot testing[J]. The New England Journal of Medicine, 2020, 383(15): 1492-1494 DOI:10.1056/NEJMc2026172. [92] CHEN JS, MA EB, HARRINGTON LB, Da COSTA M, TIAN XR, PALEFSKY JM, DOUDNA JA. CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity[J]. Science, 2018, 360(6387): 436-439 DOI:10.1126/science.aar6245. [93] AGGARWAL N, LIANG YM, FOO JL, LING H, HWANG IY, CHANG MW. FELICX: a robust nucleic acid detection method using flap endonuclease and CRISPR-Cas12[J]. Biosensors & Bioelectronics, 2023, 222: 115002. [94] GOOTENBERG JS, ABUDAYYEH OO, LEE JW, ESSLETZBICHLER P, DY AJ, JOUNG J, VERDINE V, DONGHIA N, DARINGER NM, FREIJE CA, MYHRVOLD C, BHATTACHARYYA RP, LIVNY J, REGEV A, KOONIN EV, HUNG DT, SABETI PC, COLLINS JJ, ZHANG F. Nucleic acid detection with CRISPR-Cas13a/C2c2[J]. Science, 2017, 356(6336): 438-442 DOI:10.1126/science.aam9321. [95] HU ML, LIU RH, QIU ZQ, CAO F, TIAN T, LU YX, JIANG YZ, ZHOU XM. Light-start CRISPR-Cas12a reaction with caged crRNA enables rapid and sensitive nucleic acid detection[J]. Angewandte Chemie (International Ed in English), 2023, 62(23): e202300663 DOI:10.1002/anie.202300663. [96] GUAN ZW, SUN Y, MA CB, LEE JJ, ZHANG SC, ZHANG XJ, GUO ZJ, DU Y. Dual targets-induced specific hemin/G-quadruplex assemblies for label-free electrochemical detection capable of distinguishing Salmonella and its common serotype in food samples[J]. Biosensors & Bioelectronics, 2023, 236: 115438. [97] LI JX, ZHOU JW, XIA Y, RUI YL, YANG XY, XIE GY, JIANG GM, WANG HS. Rolling circle extension-assisted loop-mediated isothermal amplification (Rol-LAMP) method for locus-specific and visible detection of RNA N6-methyladenosine[J]. Nucleic Acids Research, 2023, 51(9): e51 DOI:10.1093/nar/gkad200. [98] van der VEER HJ, van AALEN EA, MICHIELSEN CMS, HANCKMANN ETL, DECKERS J, van BORREN MMGJ, FLIPSE J, LOONEN AJM, SCHOEBER JPH, MERKX M. Glow-in-the-dark infectious disease diagnostics using CRISPR-Cas9-based split luciferase complementation[J]. ACS Central Science, 2023, 9(4): 657-667 DOI:10.1021/acscentsci.2c01467. [99] JIAO J, LIU YQ, YANG ML, ZHENG JC, LIU CH, YE WX, SONG SW, BAI TH, SONG CH, WANG MM, SHI JL, WAN R, ZHANG KX, HAO PB, FENG JC, ZHENG XB. The engineered CRISPR-Mb2Cas12a variant enables sensitive and fast nucleic acid-based pathogens diagnostics in the field[J]. Plant Biotechnology Journal, 2023, 21(7): 1465-1478 DOI:10.1111/pbi.14051. [100] NOURI R, JIANG YQ, POLITZA AJ, LIU TY, GREENE WH, ZHU YS, NUNEZ JJ, LIAN XJ, GUAN WH. STAMP-based digital CRISPR-Cas13a for amplification-free quantification of HIV-1 plasma viral loads[J]. ACS Nano, 2023, 17(11): 10701-10712 DOI:10.1021/acsnano.3c01917. [101] SHANG YT, CAI SZ, YE QH, WU QP, SHAO YN, QU XY, XIANG XR, ZHOU BQ, DING Y, CHEN MT, XUE L, ZHU HH, ZHANG JM. Quantum dot nanobeads-labelled lateral flow immunoassay strip for rapid and sensitive detection of Salmonella typhimurium based on strand displacement loop-mediated isothermal amplification[J]. Engineering, 2022, 19: 62-70 DOI:10.1016/j.eng.2021.03.024. [102] CHEN YX, HU YX, LU XN. Polyethersulfone-based microfluidic device integrated with DNA extraction on paper and recombinase polymerase amplification for the detection of Salmonella enterica[J]. ACS Sensors, 2023, 8(6): 2331-2339 DOI:10.1021/acssensors.3c00387. [103] RUDKIN GT, STOLLAR BD. High resolution detection of DNA-RNA hybrids in situ by indirect immunofluorescence[J]. Nature, 1977, 265: 472-473 DOI:10.1038/265472a0. [104] ZWIRGLMAIER K, LUDWIG W, SCHLEIFER KH. Recognition of individual genes in a single bacterial cell by fluorescence in situ hybridization: ring-FISH[J]. Molecular Microbiology, 2004, 51(1): 89-96 DOI:10.1046/j.1365-2958.2003.03834.x. [105] SCHENA M, SHALON D, DAVIS RW, BROWN PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray[J]. Science, 1995, 270(5235): 467-470 DOI:10.1126/science.270.5235.467. [106] TROESCH A, NGUYEN H, MIYADA CG, DESVARENNE S, GINGERAS TR, KAPLAN PM, CROS P, MABILAT C. Mycobacterium species identification and rifampin resistance testing with high-density DNA probe arrays[J]. Journal of Clinical Microbiology, 1999, 37(1): 49-55 DOI:10.1128/JCM.37.1.49-55.1999. [107] HEAD SR, PARIKH K, ROGERS YH, BISHAI W, GOELET P, BOYCE-JACINO MT. Solid-phase sequence scanning for drug resistance detection in tuberculosis[J]. Molecular and Cellular Probes, 1999, 13(2): 81-87 DOI:10.1006/mcpr.1998.0212. [108] PATTERSON AJ, COLANGELI R, SPIGAGLIA P, SCOTT KP. Distribution of specific tetracycline and erythromycin resistance genes in environmental samples assessed by macroarray detection[J]. Environmental Microbiology, 2007, 9(3): 703-715 DOI:10.1111/j.1462-2920.2006.01190.x. [109] ZHANG XX, ZHANG T, FANG HHP. Antibiotic resistance genes in water environment[J]. Applied Microbiology and Biotechnology, 2009, 82(3): 397-414. [110] TYAGI S, KRAMER FR. Molecular beacons: probes that fluoresce upon hybridization[J]. Nature Biotechnology, 1996, 14: 303-308. [111] SINGH G, VAJPAYEE P, RANI N, AMOAH ID, STENSTRÖM TA, SHANKER R. Exploring the potential reservoirs of non specific TEM beta lactamase (bla(TEM)) gene in the indo-gangetic region: a risk assessment approach to predict health hazards[J]. Journal of Hazardous Materials, 2016, 314: 121-128. [112] FU XR, SUN JD, YE YL, ZHANG YZ, SUN XL. A rapid and ultrasensitive dual detection platform based on Cas12a for simultaneous detection of virulence and resistance genes of drug-resistant Salmonella[J]. Biosensors & Bioelectronics, 2022, 195: 113682. [113] HU F, LIU YF, ZHAO SH, ZHANG ZM, LI XC, PENG NC, JIANG ZD. A one-pot CRISPR/Cas13a-based contamination-free biosensor for low-cost and rapid nucleic acid diagnostics[J]. Biosensors & Bioelectronics, 2022, 202: 113994. [114] LIN M, YUE HH, TIAN T, XIONG EH, ZHU DB, JIANG YZ, ZHOU XM. Glycerol additive boosts 100-fold sensitivity enhancement for one-pot RPA-CRISPR/Cas12a assay[J]. Analytical Chemistry, 2022, 94(23): 8277-8284.
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